HL_6WDJ_050

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6WDJ|1|1|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDJ_050 not in the Motif Atlas

Geometric match to HL_8VTW_010

Geometric discrepancy: 0.1469

The information below is about HL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WDJ|1|1|A|2142
6WDJ|1|1|C|2143
6WDJ|1|1|G|2144
6WDJ|1|1|C|2145
6WDJ|1|1|C|2146
6WDJ|1|1|A|2147
6WDJ|1|1|G|2148
6WDJ|1|1|U|2149

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11