HL_6WDK_010
3D structure
- PDB id
- 6WDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 6WDK|1|1|G|329, 6WDK|1|1|A|330, 6WDK|1|1|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDK_010 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1792
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6WDK|1|1|G|327
6WDK|1|1|U|328
6WDK|1|1|G|329
6WDK|1|1|A|330
6WDK|1|1|C|331
6WDK|1|1|A|332
6WDK|1|1|G|333
6WDK|1|1|C|334
6WDK|1|1|C|335
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
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