HL_6WDK_024

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDK_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2317

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WDK|1|1|U|884
6WDK|1|1|C|885
6WDK|1|1|A|886
6WDK|1|1|U|887
6WDK|1|1|C|888
6WDK|1|1|C|889
6WDK|1|1|C|890
6WDK|1|1|G|891
6WDK|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19