HL_6WDK_025

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6WDK|1|1|U|958, 6WDK|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDK_025 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1311

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6WDK|1|1|U|955
6WDK|1|1|G|956
6WDK|1|1|C|957
6WDK|1|1|U|958
6WDK|1|1|A|959
6WDK|1|1|A|960
6WDK|1|1|C|961
6WDK|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16