HL_6WDM_099

3D structure

PDB id

6WDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDM_099 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1649

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WDM|1|3|C|1314
6WDM|1|3|U|1315
6WDM|1|3|G|1316
6WDM|1|3|C|1317
6WDM|1|3|A|1318
6WDM|1|3|A|1319
6WDM|1|3|C|1320
6WDM|1|3|U|1321
6WDM|1|3|C|1322
6WDM|1|3|G|1323

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19