HL_6WDR_029
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUCAAG
- Length
- 7 nucleotides
- Bulged bases
- 6WDR|1|2|U|1550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDR_029 not in the Motif Atlas
- Geometric match to HL_5J7L_179
- Geometric discrepancy: 0.3379
- The information below is about HL_5J7L_179
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_04783.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6WDR|1|2|U|1548
6WDR|1|2|U|1549
6WDR|1|2|U|1550
6WDR|1|2|C|1551
6WDR|1|2|A|1552
6WDR|1|2|A|1553
6WDR|1|2|G|1554
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S17-A
- Chain c
- 40S ribosomal protein S28-A
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