HL_6WDR_034

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGUAAUUCUA

Length

11 nucleotides

Bulged bases

6WDR|1|2|U|421, 6WDR|1|2|U|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_034 not in the Motif Atlas

Geometric match to HL_3EPH_001

Geometric discrepancy: 0.3303

The information below is about HL_3EPH_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6WDR|1|2|U|415
6WDR|1|2|G|416
6WDR|1|2|G|417
6WDR|1|2|U|418
6WDR|1|2|A|419
6WDR|1|2|A|420
6WDR|1|2|U|421
6WDR|1|2|U|422
6WDR|1|2|C|423
6WDR|1|2|U|424
6WDR|1|2|A|425

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A

Chain k

Ribosome biogenesis protein TSR1