HL_6WLT_077

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WLT_077 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.3342

The information below is about HL_5VPO_138

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_56046.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6WLT|16|A|G|69
6WLT|16|A|U|70
6WLT|16|A|A|71
6WLT|16|A|A|72
6WLT|16|A|A|73
6WLT|16|A|U|74
6WLT|16|A|C|75

Current chains

Chain A

RNA (231-MER)

Nearby chains