HL_6WLU_031

3D structure

PDB id

6WLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUUUAACA

Length

8 nucleotides

Bulged bases

6WLU|7|A|U|38, 6WLU|7|A|A|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WLU_031 not in the Motif Atlas

Geometric match to HL_4JXZ_002

Geometric discrepancy: 0.3637

The information below is about HL_4JXZ_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

T-loop

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

6WLU|7|A|U|35
6WLU|7|A|U|36
6WLU|7|A|U|37
6WLU|7|A|U|38
6WLU|7|A|A|39
6WLU|7|A|A|40
6WLU|7|A|C|41
6WLU|7|A|A|42

Current chains

Chain A

RNA (231-MER)

Nearby chains