HL_6WNT_006

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6WNT|1|4|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0986

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNT|1|4|G|194
6WNT|1|4|A|195
6WNT|1|4|A|196
6WNT|1|4|A|197
6WNT|1|4|C|198
6WNT|1|4|A|199
6WNT|1|4|U|200
6WNT|1|4|C|201

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28