RNA 3D Hub //

6WNT Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WNT_0011/4/59:68Pseudoknot geometry
geometric
HL_4GXY_003
HL_65794.5
HL_6WNT_0021/4/87:95No text annotation
geometric
HL_5J7L_135
HL_80241.1
HL_6WNT_0031/4/123:128No text annotation
geometric
HL_5J7L_136
HL_82710.2
HL_6WNT_0041/4/137:142Externally structured
geometric
HL_5TBW_022
NA
HL_6WNT_0051/4/158:168No text annotation
geometric
HL_5J7L_138
HL_68257.1
HL_6WNT_0061/4/194:201No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_6WNT_0071/4/225:230No text annotation
geometric
HL_5J7L_140
HL_62934.1
HL_6WNT_0081/4/246:252No text annotation
geometric
HL_5J7L_141
HL_37369.2
HL_6WNT_0091/4/305:312T-loop with 2 bulged bases not stacked
geometric
HL_5C45_003
NA
HL_6WNT_0101/4/327:335T-loop with unstacked turn
geometric
HL_7RQB_012
NA
HL_6WNT_0111/4/382:392No text annotation
geometric
HL_5J7L_145
HL_91503.7
HL_6WNT_0121/4/410:417Pseudoknot geometry
geometric
HL_5J7L_146
HL_30680.3
HL_6WNT_0131/4/462:467GNRA
geometric
HL_7RQB_015
NA
HL_6WNT_0141/4/487:493GNRA
geometric
HL_5J7L_148
HL_37824.8
HL_6WNT_0151/4/544:549No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_6WNT_0161/4/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.9
HL_6WNT_0171/4/611:617No text annotation
geometric
HL_361D_002
HL_13963.3
HL_6WNT_0181/4/629:634GNRA
geometric
HL_5J7L_152
HL_37824.8
HL_6WNT_0711/4/641:647No text annotation
geometric
HL_5J7L_153
HL_13529.1
HL_6WNT_0201/4/712:719GNRA wlth tandem sheared
geometric
HL_5J7L_154
HL_81538.2
HL_6WNT_0211/4/744:753No text annotation
geometric
HL_7A0S_022
HL_88205.2
HL_6WNT_0221/4/779:785No text annotation
geometric
HL_7A0S_007
HL_53890.2
HL_6WNT_0231/4/826:831No text annotation
geometric
HL_7RQB_025
NA
HL_6WNT_0741/4/880:897No text annotation
HL_6WNT_0241/4/882:894No text annotation
HL_6WNT_0251/4/955:962No text annotation
HL_6WNT_0261/4/978:985No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6WNT_0271/4/1061:1067No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_6WNT_0731/4/1100:1114No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_6WNT_0281/4/1104:1110No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_6WNT_0291/4/1192:1202No text annotation
HL_6WNT_0301/4/1220:1227No text annotation
geometric
HL_7RQB_022
NA
HL_6WNT_0311/4/1299:1306No text annotation
HL_6WNT_0321/4/1350:1355GNRA
geometric
HL_5J7L_164
HL_37824.8
HL_6WNT_0331/4/1409:1417T-loop with 2 stacked bulged bases
geometric
HL_5J7L_165
HL_28252.9
HL_6WNT_0341/4/1452:1458Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_166
HL_57176.2
HL_6WNT_0351/4/1491:1496GNRA
geometric
HL_5J7L_167
HL_37824.8
HL_6WNT_0361/4/1517:1526No text annotation
geometric
HL_5J7L_168
HL_81545.2
HL_6WNT_0371/4/1579:1587Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_6WNT_0381/4/1620:1626Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_6WNT_0391/4/1661:1666No text annotation
geometric
HL_8C3A_196
NA
HL_6WNT_0401/4/1693:1696Mini UNCG
geometric
HL_4V9F_041
HL_48778.2
HL_6WNT_0411/4/1740:1747No text annotation
geometric
HL_7RQB_040
NA
HL_6WNT_0421/4/1758:1764GNRA
geometric
HL_5J7L_174
HL_37824.8
HL_6WNT_0431/4/1819:1824UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_6WNT_0441/4/1855:1861No text annotation
geometric
HL_5TBW_012
NA
HL_6WNT_0451/4/1880:1884No text annotation
geometric
HL_4V9F_046
HL_80709.3
HL_6WNT_0461/4/1905:1915No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_6WNT_0471/4/1934:1939GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_6WNT_0481/4/1996:2001GNRA
geometric
HL_2OIU_001
HL_37824.8
HL_6WNT_0491/4/2038:2048No text annotation
HL_6WNT_0501/4/2077:2085No text annotation
geometric
HL_5J7L_182
HL_20167.2
HL_6WNT_0511/4/2155:2164No text annotation
geometric
HL_4WF9_047
HL_61996.3
HL_6WNT_0521/4/2267:2280No text annotation
HL_6WNT_0531/4/2337:2343No text annotation
geometric
HL_5J7L_185
HL_49922.4
HL_6WNT_0541/4/2376:2384No text annotation
geometric
HL_4LFB_002
HL_31585.4
HL_6WNT_0551/4/2392:2404No text annotation
geometric
HL_7RQB_054
NA
HL_6WNT_0561/4/2431:2441No text annotation
geometric
HL_5J7L_188
NA
HL_6WNT_0571/4/2452:2459Pseudoknot geometry
geometric
HL_5J7L_189
HL_93324.4
HL_6WNT_0581/4/2484:2489GNRA
geometric
HL_5J7L_190
HL_37824.8
HL_6WNT_0591/4/2502:2507GNRA
geometric
HL_7RQB_020
NA
HL_6WNT_0601/4/2532:2541No text annotation
geometric
HL_5J7L_192
HL_53454.2
HL_6WNT_0611/4/2599:2607No text annotation
geometric
HL_7A0S_059
HL_32735.2
HL_6WNT_0621/4/2656:2663GNRA variation
geometric
HL_5J7L_194
HL_31585.4
HL_6WNT_0631/4/2679:2685No text annotation
geometric
HL_5TBW_063
NA
HL_6WNT_0641/4/2722:2727GNRA
geometric
HL_7RQB_069
NA
HL_6WNT_0651/4/2786:2791GNRA
geometric
HL_4V9F_066
HL_37824.8
HL_6WNT_0661/4/2829:2834Ribsomal LSU H95
geometric
HL_5J7L_198
HL_65794.5
HL_6WNT_0671/4/2873:2887No text annotation
geometric
HL_5J7L_199
HL_74055.2
HL_6WNT_0681/4/2923:2929UNCG variation
geometric
HL_7A0S_023
HL_53890.2
HL_6WNT_0691/4/2947:2955No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_6WNT_0701/4/2984:2989GNRA
geometric
HL_4Y1M_004
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_6WNT_019No text annotation
HL_6WNT_072No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WNT_0011/4/24:30,
1/4/510:516		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_04021.2
IL_6WNT_0021/4/36:37,
1/4/442:444		Single bulged A
geometric
IL_7RQB_002
NA
IL_6WNT_0031/4/43:44,
1/4/434:436		Minor groove platform
geometric
IL_5J7L_247
IL_51454.3
IL_6WNT_0041/4/81:85,
1/4/97:105		No text annotation
geometric
IL_5J7L_248
IL_37015.1
IL_6WNT_0051/4/183:184,
1/4/212:214		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_6WNT_0061/4/188:194,
1/4/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
IL_04346.10
IL_6WNT_0071/4/239:245,
1/4/253:258		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
IL_26307.2
IL_6WNT_0081/4/269:271,
1/4/366:370		No text annotation
geometric
IL_5J7L_252
IL_47972.1
IL_6WNT_0091/4/274:281,
1/4/359:363		No text annotation
geometric
IL_5J7L_253
IL_77870.1
IL_6WNT_0101/4/293:295,
1/4/343:347		No text annotation
geometric
IL_5J7L_254
IL_69440.3
IL_6WNT_0111/4/481:484,
1/4/496:509		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_6WNT_0121/4/536:539,
1/4/554:557		Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_6WNT_0131/4/564:566,
1/4/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1
IL_6WNT_0141/4/606:610,
1/4/618:622		AAA cross-strand stack
geometric
IL_5J7L_258
IL_66798.2
IL_6WNT_0151/4/672:674,
1/4/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_6WNT_0161/4/674:678,
1/4/799:806		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_6WNT_0171/4/697:698,
1/4/763:765		Single bulged A
geometric
IL_5J7L_261
IL_31462.7
IL_6WNT_0181/4/702:703,
1/4/728:730		Single bulged G
geometric
IL_7A0S_017
IL_00225.14
IL_6WNT_0191/4/703:707,
1/4/724:728		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_6WNT_0201/4/738:740,
1/4/757:758		Major groove platform
geometric
IL_4WF9_026
IL_48076.6
IL_6WNT_0211/4/775:777,
1/4/787:791		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_6WNT_0221/4/844:847,
1/4/933:934		90 degree turn
geometric
IL_5J7L_267
IL_90729.1
IL_6WNT_1061/4/844:848,
1/4/930:934		No text annotation
geometric
IL_5J7L_399
IL_96236.1
IL_6WNT_0231/4/847:848,
1/4/930:933		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_6WNT_0241/4/850:851,
1/4/926:928		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_6WNT_0251/4/856:862,
1/4/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_6WNT_1071/4/862:863,
1/4/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_6WNT_0271/4/864:868,
1/4/909:912		C-loop
geometric
IL_4V9F_051
IL_63596.11
IL_6WNT_0281/4/870:872,
1/4/905:907		Isolated non-canonical cWW pair
geometric
IL_4E48_006
IL_87907.2
IL_6WNT_0291/4/875:879,
1/4/898:902		No text annotation
IL_6WNT_0301/4/879:882,
1/4/894:898		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_6WNT_0311/4/994:996,
1/4/1287:1288		Single bulged C
geometric
IL_7RQB_035
NA
IL_6WNT_0321/4/998:1002,
1/4/1281:1285		UAA/GAN
geometric
IL_4WF9_036
IL_38507.2
IL_6WNT_0331/4/1004:1011,
1/4/1278:1279		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_6WNT_0341/4/1011:1013,
1/4/1277:1278		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_6WNT_0351/4/1018:1024,
1/4/1268:1272		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_6WNT_0361/4/1039:1047,
1/4/1137:1145		Bacterial 5S Loop E
geometric
IL_1DFU_001
IL_56455.6
IL_6WNT_0371/4/1083:1084,
1/4/1131:1133		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_6WNT_0381/4/1089:1094,
1/4/1122:1126		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_6WNT_0391/4/1096:1097,
1/4/1117:1120		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_6WNT_0401/4/1100:1104,
1/4/1110:1114		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_6WNT_0411/4/1159:1162,
1/4/1249:1251		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6WNT_0421/4/1166:1169,
1/4/1242:1245		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_6WNT_1081/4/1171:1179,
1/4/1236:1240		Kink-turn
geometric
IL_4V9F_042
IL_99692.2
IL_6WNT_0441/4/1187:1190,
1/4/1204:1207		No text annotation
IL_6WNT_1131/4/1215:1218,
1/4/1229:1230		Major groove platform
geometric
IL_5J7L_385
IL_48076.6
IL_6WNT_0461/4/1324:1326,
1/4/1375:1378		Isolated cWS basepair
geometric
IL_5J7L_286
IL_42997.3
IL_6WNT_0471/4/1330:1334,
1/4/1368:1371		No text annotation
geometric
IL_5J7L_287
IL_91920.1
IL_6WNT_0481/4/1336:1343,
1/4/1362:1366		Kink-turn
geometric
IL_5J7L_288
IL_70923.9
IL_6WNT_0491/4/1390:1397,
1/4/2139:2145		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
IL_04346.10
IL_6WNT_0501/4/1438:1441,
1/4/1731:1732		Major groove platform; stack outside cWW
geometric
IL_7RQB_050
NA
IL_6WNT_0511/4/1447:1451,
1/4/1459:1461		C-loop
geometric
IL_5J7L_291
IL_63596.11
IL_6WNT_0521/4/1479:1483,
1/4/1504:1508		UAA/GAN
geometric
IL_5J7L_292
IL_89021.2
IL_6WNT_0531/4/1485:1489,
1/4/1498:1502		tSH-tHW-tHS
geometric
IL_5J7L_293
IL_17136.7
IL_6WNT_0541/4/1543:1544,
1/4/1710:1715		No text annotation
geometric
IL_5J7L_294
IL_87211.1
IL_6WNT_0551/4/1545:1549,
1/4/1705:1709		UAA/GAN
geometric
IL_5J7L_295
IL_38507.2
IL_6WNT_0561/4/1560:1563,
1/4/1685:1689		Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
IL_58112.2
IL_6WNT_0571/4/1565:1568,
1/4/1679:1683		tSH-tHW
geometric
IL_5J7L_297
IL_99646.2
IL_6WNT_0581/4/1578:1579,
1/4/1587:1589		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_6WNT_0591/4/1596:1599,
1/4/1648:1652		No text annotation
geometric
IL_5J7L_299
IL_68574.4
IL_6WNT_0601/4/1602:1606,
1/4/1641:1645		tSH-tHW-tHS
geometric
IL_5J7L_300
IL_38862.4
IL_6WNT_0611/4/1609:1610,
1/4/1635:1638		180 degree turn
geometric
IL_5J7L_301
IL_00881.1
IL_6WNT_0621/4/1617:1619,
1/4/1627:1628		Single bulged A
geometric
IL_5J7L_302
IL_31462.7
IL_6WNT_1141/4/1654:1657,
1/4/1670:1674		UAA/GAN variation
geometric
IL_5J7L_303
IL_23774.1
IL_6WNT_0641/4/1779:1784,
1/4/2132:2134		No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_6WNT_0651/4/1791:1793,
1/4/2123:2125		Isolated tWW turn
geometric
IL_4WF9_063
IL_67095.2
IL_6WNT_0661/4/1794:1797,
1/4/2121:2122		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6WNT_1091/4/1794:1802,
1/4/2118:2122		No text annotation
geometric
IL_4WF9_117
IL_22854.4
IL_6WNT_0671/4/1797:1802,
1/4/2118:2121		Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_6WNT_0681/4/1814:1819,
1/4/1824:1830		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_6WNT_0691/4/1840:1846,
1/4/1870:1874		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_6WNT_0701/4/1848:1852,
1/4/1864:1868		Triple sheared
geometric
IL_5J7L_310
IL_50730.2
IL_6WNT_0711/4/1898:1899,
1/4/2108:2110		Single bulged A
geometric
IL_4WF9_068
IL_31462.7
IL_6WNT_0721/4/1926:1932,
1/4/1941:1949		Kink-turn related
geometric
IL_5J7L_313
IL_17069.5
IL_6WNT_0731/4/1965:1968,
1/4/2030:2031		Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_6WNT_0741/4/1969:1970,
1/4/2026:2029		Multiple bulged bases
geometric
IL_5WLH_001
IL_82107.5
IL_6WNT_0751/4/1974:1977,
1/4/2021:2022		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_68140.4
IL_6WNT_1101/4/1979:1988,
1/4/2010:2019		No text annotation
geometric
IL_5J7L_387
IL_61249.1
IL_6WNT_0761/4/1992:1995,
1/4/2002:2006		UAA/GAN related
geometric
IL_5J7L_317
IL_77691.5
IL_6WNT_0771/4/2061:2062,
1/4/2092:2095		Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_6WNT_0781/4/2062:2073,
1/4/2089:2092		No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_6WNT_0791/4/2178:2180,
1/4/2745:2746		Major groove platform
geometric
IL_5J7L_320
IL_48076.6
IL_6WNT_0801/4/2182:2184,
1/4/2740:2743		No text annotation
geometric
IL_5J7L_321
IL_83389.2
IL_6WNT_0811/4/2195:2197,
1/4/2570:2571		Single bulged U
geometric
IL_7RQB_080
NA
IL_6WNT_0821/4/2198:2199,
1/4/2566:2569		Minor groove platform
geometric
IL_4V9F_075
IL_51454.3
IL_6WNT_0831/4/2209:2211,
1/4/2364:2367		Isolated tHS basepair with bulges
geometric
IL_5J7L_325
IL_85599.2
IL_6WNT_0841/4/2213:2215,
1/4/2360:2362		Isolated non-canonical cWW pair
geometric
IL_5J7L_326
IL_28037.2
IL_6WNT_1151/4/2231:2233,
1/4/2312:2314		Isolated non-canonical cWW pair
geometric
IL_4PCJ_001
IL_28037.2
IL_6WNT_1111/4/2236:2249,
1/4/2305:2309		No text annotation
IL_6WNT_1121/4/2252:2265,
1/4/2282:2302		No text annotation
IL_6WNT_0871/4/2330:2332,
1/4/2348:2349		Single bulged U
geometric
IL_5J7L_331
IL_89505.4
IL_6WNT_0881/4/2478:2481,
1/4/2492:2495		Double sheared
geometric
IL_5J7L_333
IL_09705.15
IL_6WNT_0891/4/2529:2531,
1/4/2542:2543		No text annotation
IL_6WNT_0901/4/2594:2598,
1/4/2608:2612		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_6WNT_0911/4/2635:2636,
1/4/2708:2710		Major groove platform
geometric
IL_4OQU_002
IL_48076.6
IL_6WNT_0921/4/2638:2640,
1/4/2702:2706		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_6WNT_0931/4/2640:2641,
1/4/2699:2702		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_6WNT_0941/4/2650:2651,
1/4/2668:2671		Major groove platform with intercalation
geometric
IL_5J7L_342
IL_02555.1
IL_6WNT_0951/4/2719:2720,
1/4/2729:2731		No text annotation
IL_6WNT_0961/4/2764:2768,
1/4/2902:2910		tSH-tHS-tHW
geometric
IL_5J7L_345
IL_04638.3
IL_6WNT_0971/4/2780:2786,
1/4/2791:2796		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_6WNT_0981/4/2808:2812,
1/4/2853:2855		C-loop
geometric
IL_5J7L_347
IL_63596.11
IL_6WNT_0991/4/2815:2819,
1/4/2846:2850		UAA/GAN related, with intercalation
geometric
IL_5J7L_348
IL_23774.1
IL_6WNT_1001/4/2823:2824,
1/4/2839:2842		Multiple bulged bases
geometric
IL_5J7L_349
IL_42626.2
IL_6WNT_1011/4/2865:2870,
1/4/2890:2895		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_6WNT_1021/4/2934:2939,
1/4/3017:3020		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_6WNT_1031/4/2966:2967,
1/4/3006:3008		Major groove intercalation
geometric
IL_4WF9_112
IL_31462.7
IL_6WNT_1041/4/2971:2974,
1/4/2998:3002		Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
IL_64231.5
IL_6WNT_1051/4/2975:2980,
1/4/2993:2997		tHS double platform
geometric
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_6WNT_026Isolated non-canonical cWW with bulges
IL_6WNT_043No text annotation
IL_6WNT_045Major groove platform with extra cWW
IL_6WNT_063Triple sheared related
IL_6WNT_085Tandem non-canonical cWW pairs
IL_6WNT_086No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6WNT_0011/4/30:31,
1/4/474:481,
1/4/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_6WNT_0151/4/30:31,
1/4/474:484,
1/4/496:510		No text annotation
geometric
J3_5J7L_066
J3_92134.2
J3_6WNT_0161/4/32:35,
1/4/445:461,
1/4/468:473		No text annotation
geometric
J3_5J7L_067
J3_30040.2
J3_6WNT_0021/4/56:57,
1/4/70:76,
1/4/110:114		No text annotation
geometric
J3_4V9F_014
J3_35667.2
J3_6WNT_0171/4/297:301,
1/4/316:325,
1/4/337:341		No text annotation
geometric
J3_5J7L_068
J3_46299.2
J3_6WNT_0031/4/683:689,
1/4/773:775,
1/4/791:794		No text annotation
geometric
J3_5J7L_038
J3_64189.2
J3_6WNT_0041/4/698:700,
1/4/732:736,
1/4/760:763		No text annotation
geometric
J3_4WF9_003
J3_44724.7
J3_6WNT_0181/4/1024:1032,
1/4/1152:1158,
1/4/1252:1268		No text annotation
J3_6WNT_0051/4/1048:1052,
1/4/1076:1082,
1/4/1134:1136		No text annotation
geometric
J3_5J7L_049
J3_89095.1
J3_6WNT_0191/4/1183:1186,
1/4/1208:1215,
1/4/1230:1232		No text annotation
J3_6WNT_0071/4/1426:1431,
1/4/1753:1755,
1/4/1767:1770		No text annotation
geometric
J3_5J7L_041
J3_32852.6
J3_6WNT_0081/4/1434:1437,
1/4/1733:1739,
1/4/1748:1750		No text annotation
geometric
J3_7A0S_007
J3_71677.1
J3_6WNT_0091/4/1472:1477,
1/4/1510:1513,
1/4/1530:1531		No text annotation
geometric
J3_5J7L_043
J3_92705.1
J3_6WNT_0201/4/1552:1557,
1/4/1692:1693,
1/4/1696:1702		No text annotation
geometric
J3_5J7L_069
J3_34864.2
J3_6WNT_0101/4/2219:2221,
1/4/2324:2328,
1/4/2351:2356		Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_6WNT_0211/4/2410:2412,
1/4/2512:2523,
1/4/2549:2555		No text annotation
geometric
J3_5J7L_070
J3_20992.1
J3_6WNT_0111/4/2423:2427,
1/4/2445:2451,
1/4/2460:2465		No text annotation
J3_6WNT_0121/4/2645:2648,
1/4/2673:2675,
1/4/2689:2695		No text annotation
geometric
J3_5J7L_046
J3_32601.5
J3_6WNT_0131/4/2917:2919,
1/4/2933:2934,
1/4/3020:3022		No text annotation
geometric
J3_5J7L_047
J3_30104.1
J3_6WNT_0141/4/2940:2943,
1/4/2959:2964,
1/4/3010:3016		No text annotation
geometric
J3_5J7L_048
J3_64069.1
J4_6WNT_0011/4/268:269,
1/4/370:375,
1/4/399:406,
1/4/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_6WNT_0021/4/601:604,
1/4/624:628,
1/4/635:638,
1/4/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_6WNT_0031/4/1398:1404,
1/4/1422:1423,
1/4/1773:1776,
1/4/2137:2138		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_6WNT_0041/4/1438:1442,
1/4/1466:1471,
1/4/1532:1533,
1/4/1725:1732		No text annotation
J4_6WNT_0051/4/1441:1442,
1/4/1466:1471,
1/4/1532:1533,
1/4/1725:1731		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_6WNT_0061/4/1572:1573,
1/4/1594:1595,
1/4/1653:1654,
1/4/1674:1675		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_6WNT_0071/4/1900:1904,
1/4/1916:1920,
1/4/1955:1958,
1/4/2103:2107		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_6WNT_0081/4/1961:1963,
1/4/2033:2034,
1/4/2052:2061,
1/4/2095:2100		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_6WNT_0091/4/2413:2417,
1/4/2471:2475,
1/4/2498:2500,
1/4/2509:2511		No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_6WNT_0101/4/2771:2774,
1/4/2802:2804,
1/4/2859:2863,
1/4/2897:2899		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_6WNT_0011/4/47:54,
1/4/116:121,
1/4/130:131,
1/4/148:150,
1/4/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_6WNT_0021/4/531:533,
1/4/560:564,
1/4/577:579,
1/4/1389:1390,
1/4/2145:2146		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_6WNT_0031/4/584:589,
1/4/668:671,
1/4/809:812,
1/4/1323:1324,
1/4/1378:1384		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_6WNT_0041/4/1802:1810,
1/4/1834:1835,
1/4/1879:1880,
1/4/1884:1892,
1/4/2116:2118		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_6WNT_0051/4/2202:2205,
1/4/2371:2374,
1/4/2386:2387,
1/4/2409:2410,
1/4/2555:2563		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_6WNT_0011/4/45:46,
1/4/179:183,
1/4/214:224,
1/4/231:235,
1/4/262:266,
1/4/426:433		No text annotation
J6_6WNT_0021/4/2202:2205,
1/4/2371:2374,
1/4/2386:2387,
1/4/2409:2412,
1/4/2512:2523,
1/4/2549:2563		No text annotation
J7_6WNT_0011/4/8:15,
1/4/525:531,
1/4/2146:2151,
1/4/2168:2171,
1/4/2753:2758,
1/4/2916:2917,
1/4/3022:3023		No text annotation
J7_6WNT_0021/4/817:822,
1/4/835:838,
1/4/940:946,
1/4/971:976,
1/4/987:991,
1/4/1291:1292,
1/4/1313:1318		No text annotation

Problematic loops

#loop idProblemSequence
J3_6WNT_006No text annotation

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