HL_6WNT_009

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6WNT|1|4|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_009 not in the Motif Atlas

Geometric match to HL_5C45_003

Geometric discrepancy: 0.1528

The information below is about HL_5C45_003

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6WNT|1|4|C|305
6WNT|1|4|U|306
6WNT|1|4|G|307
6WNT|1|4|G|308
6WNT|1|4|A|309
6WNT|1|4|A|310
6WNT|1|4|A|311
6WNT|1|4|G|312

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24