HL_6WNT_010

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6WNT|1|4|G|329, 6WNT|1|4|A|330, 6WNT|1|4|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_010 not in the Motif Atlas

Geometric match to HL_7RQB_012

Geometric discrepancy: 0.1234

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6WNT|1|4|G|327
6WNT|1|4|U|328
6WNT|1|4|G|329
6WNT|1|4|A|330
6WNT|1|4|C|331
6WNT|1|4|A|332
6WNT|1|4|G|333
6WNT|1|4|C|334
6WNT|1|4|C|335

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24