HL_6WNT_012

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6WNT|1|4|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_012 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.087

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNT|1|4|G|410
6WNT|1|4|G|411
6WNT|1|4|A|412
6WNT|1|4|C|413
6WNT|1|4|C|414
6WNT|1|4|A|415
6WNT|1|4|U|416
6WNT|1|4|C|417

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains