HL_6WNT_020

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_020 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.2879

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6WNT|1|4|G|712
6WNT|1|4|G|713
6WNT|1|4|U|714
6WNT|1|4|A|715
6WNT|1|4|A|716
6WNT|1|4|C|717
6WNT|1|4|A|718
6WNT|1|4|C|719

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains