HL_6WNT_034

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

6WNT|1|4|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_034 not in the Motif Atlas

Geometric match to HL_5J7L_166

Geometric discrepancy: 0.1828

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6WNT|1|4|G|1452
6WNT|1|4|U|1453
6WNT|1|4|U|1454
6WNT|1|4|A|1455
6WNT|1|4|A|1456
6WNT|1|4|U|1457
6WNT|1|4|C|1458

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22