HL_6WNT_036

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6WNT|1|4|U|1524, 6WNT|1|4|U|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_036 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.1099

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|G|1517
6WNT|1|4|U|1518
6WNT|1|4|U|1519
6WNT|1|4|A|1520
6WNT|1|4|A|1521
6WNT|1|4|U|1522
6WNT|1|4|A|1523
6WNT|1|4|U|1524
6WNT|1|4|U|1525
6WNT|1|4|C|1526

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23