HL_6WNT_041

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6WNT|1|4|A|1742, 6WNT|1|4|A|1744, 6WNT|1|4|A|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_041 not in the Motif Atlas

Geometric match to HL_7RQB_040

Geometric discrepancy: 0.0906

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6WNT|1|4|C|1740
6WNT|1|4|G|1741
6WNT|1|4|A|1742
6WNT|1|4|C|1743
6WNT|1|4|A|1744
6WNT|1|4|C|1745
6WNT|1|4|A|1746
6WNT|1|4|G|1747

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain s

50S ribosomal protein L22