HL_6WNT_073

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

6WNT|1|4|G|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_073 not in the Motif Atlas

Homologous match to HL_5J7L_215

Geometric discrepancy: 0.188

The information below is about HL_5J7L_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6WNT|1|4|A|1100
6WNT|1|4|C|1101
6WNT|1|4|C|1102
6WNT|1|4|C|1103
6WNT|1|4|C|1104
6WNT|1|4|A|1105
6WNT|1|4|U|1106
6WNT|1|4|G|1107
6WNT|1|4|C|1108
6WNT|1|4|C|1109
6WNT|1|4|G|1110
6WNT|1|4|A|1111
6WNT|1|4|A|1112
6WNT|1|4|C|1113
6WNT|1|4|U|1114

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L31

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18