HL_6WNV_005

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

6WNV|1|3|U|209, 6WNV|1|3|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_005 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.3592

The information below is about HL_8VM8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6WNV|1|3|C|206
6WNV|1|3|C|207
6WNV|1|3|U|208
6WNV|1|3|U|209
6WNV|1|3|C|210
6WNV|1|3|G|211
6WNV|1|3|G|212
6WNV|1|3|G|213

Current chains

Chain 3

16S ribosomal RNA

Nearby chains