HL_6WNV_023

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_023 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1136

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6WNV|1|3|U|1076
6WNV|1|3|G|1077
6WNV|1|3|U|1078
6WNV|1|3|G|1079
6WNV|1|3|A|1080
6WNV|1|3|A|1081

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain J

30S ribosomal protein S5