HL_6WNV_024

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6WNV|1|3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1533

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6WNV|1|3|G|1089
6WNV|1|3|U|1090
6WNV|1|3|U|1091
6WNV|1|3|A|1092
6WNV|1|3|A|1093
6WNV|1|3|G|1094
6WNV|1|3|U|1095
6WNV|1|3|C|1096

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain L

30S ribosomal protein S7

Chain Z

30S ribosomal protein S21