HL_6WNV_043

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6WNV|1|4|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_043 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1002

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNV|1|4|G|410
6WNV|1|4|G|411
6WNV|1|4|A|412
6WNV|1|4|C|413
6WNV|1|4|C|414
6WNV|1|4|A|415
6WNV|1|4|U|416
6WNV|1|4|C|417

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15