HL_6WNV_061

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_061 not in the Motif Atlas

Geometric match to HL_7RQB_022

Geometric discrepancy: 0.2637

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNV|1|4|C|1220
6WNV|1|4|G|1221
6WNV|1|4|U|1222
6WNV|1|4|A|1223
6WNV|1|4|A|1224
6WNV|1|4|U|1225
6WNV|1|4|A|1226
6WNV|1|4|G|1227

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6

Chain i

50S ribosomal protein L11