HL_6WNV_064
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WNV_064 not in the Motif Atlas
- Geometric match to HL_5J7L_165
- Geometric discrepancy: 0.1402
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6WNV|1|4|G|1409
6WNV|1|4|U|1410
6WNV|1|4|G|1411
6WNV|1|4|A|1412
6WNV|1|4|A|1413
6WNV|1|4|A|1414
6WNV|1|4|A|1415
6WNV|1|4|G|1416
6WNV|1|4|C|1417
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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