3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
6WNV|1|4|A|2041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WNV_080 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.2033
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6WNV|1|4|G|2038
6WNV|1|4|U|2039
6WNV|1|4|A|2040
6WNV|1|4|A|2041
6WNV|1|4|C|2042
6WNV|1|4|U|2043
6WNV|1|4|A|2044
6WNV|1|4|U|2045
6WNV|1|4|A|2046
6WNV|1|4|A|2047
6WNV|1|4|C|2048

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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