HL_6WNV_082
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6WNV|1|4|A|2158, 6WNV|1|4|A|2159, 6WNV|1|4|G|2160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WNV_082 not in the Motif Atlas
- Geometric match to HL_4WF9_047
- Geometric discrepancy: 0.1424
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6WNV|1|4|G|2155
6WNV|1|4|U|2156
6WNV|1|4|G|2157
6WNV|1|4|A|2158
6WNV|1|4|A|2159
6WNV|1|4|G|2160
6WNV|1|4|A|2161
6WNV|1|4|U|2162
6WNV|1|4|G|2163
6WNV|1|4|C|2164
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
- Chain r
- 50S ribosomal protein L21
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