HL_6WNV_084

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

6WNV|1|4|A|2339, 6WNV|1|4|U|2341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_084 not in the Motif Atlas

Geometric match to HL_5J7L_185

Geometric discrepancy: 0.187

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6WNV|1|4|G|2337
6WNV|1|4|U|2338
6WNV|1|4|A|2339
6WNV|1|4|A|2340
6WNV|1|4|U|2341
6WNV|1|4|C|2342
6WNV|1|4|C|2343

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2