HL_6WNV_089

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_089 not in the Motif Atlas

Geometric match to HL_5J7L_190

Geometric discrepancy: 0.1239

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6WNV|1|4|U|2484
6WNV|1|4|G|2485
6WNV|1|4|A|2486
6WNV|1|4|C|2487
6WNV|1|4|G|2488
6WNV|1|4|G|2489

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15

Chain w

50S ribosomal protein L27