HL_6WNV_098

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6WNV|1|4|G|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_098 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.1204

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|C|2873
6WNV|1|4|U|2874
6WNV|1|4|G|2875
6WNV|1|4|A|2876
6WNV|1|4|A|2877
6WNV|1|4|A|2878
6WNV|1|4|G|2879
6WNV|1|4|C|2880
6WNV|1|4|A|2881
6WNV|1|4|U|2882
6WNV|1|4|C|2883
6WNV|1|4|U|2884
6WNV|1|4|A|2885
6WNV|1|4|A|2886
6WNV|1|4|G|2887

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13