HL_6WNV_099

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6WNV|1|4|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_099 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3546

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNV|1|4|C|2923
6WNV|1|4|U|2924
6WNV|1|4|U|2925
6WNV|1|4|U|2926
6WNV|1|4|A|2927
6WNV|1|4|A|2928
6WNV|1|4|G|2929

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains