HL_6WNW_018

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6WNW|1|3|C|841, 6WNW|1|3|U|842, 6WNW|1|3|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_018 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3894

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6WNW|1|3|C|840
6WNW|1|3|C|841
6WNW|1|3|U|842
6WNW|1|3|U|843
6WNW|1|3|G|844
6WNW|1|3|A|845
6WNW|1|3|G|846

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain W

30S ribosomal protein S18