HL_6WNW_036

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

6WNW|1|4|C|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_036 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3725

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|G|136
6WNW|1|4|U|137
6WNW|1|4|U|138
6WNW|1|4|U|139
6WNW|1|4|C|140
6WNW|1|4|G|141
6WNW|1|4|A|142
6WNW|1|4|C|143

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23