HL_6WNW_065

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_065 not in the Motif Atlas

Geometric match to HL_5J7L_165

Geometric discrepancy: 0.0988

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6WNW|1|4|G|1409
6WNW|1|4|U|1410
6WNW|1|4|G|1411
6WNW|1|4|A|1412
6WNW|1|4|A|1413
6WNW|1|4|A|1414
6WNW|1|4|A|1415
6WNW|1|4|G|1416
6WNW|1|4|C|1417

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22