3D structure

PDB id
6WNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WNW_080 not in the Motif Atlas
Geometric match to HL_5J7L_179
Geometric discrepancy: 0.1736
The information below is about HL_5J7L_179
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_04783.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
9

Unit IDs

6WNW|1|4|C|1996
6WNW|1|4|G|1997
6WNW|1|4|C|1998
6WNW|1|4|A|1999
6WNW|1|4|A|2000
6WNW|1|4|G|2001

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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