HL_6WNW_084

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6WNW|1|4|C|2273, 6WNW|1|4|A|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_084 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2755

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WNW|1|4|A|2270
6WNW|1|4|C|2271
6WNW|1|4|G|2272
6WNW|1|4|C|2273
6WNW|1|4|C|2274
6WNW|1|4|A|2275
6WNW|1|4|G|2276
6WNW|1|4|U|2277

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11

Chain a

50S ribosomal protein L1