HL_6WNW_087

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6WNW|1|4|A|2396, 6WNW|1|4|C|2403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_087 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.0658

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6WNW|1|4|C|2392
6WNW|1|4|U|2393
6WNW|1|4|A|2394
6WNW|1|4|A|2395
6WNW|1|4|A|2396
6WNW|1|4|G|2397
6WNW|1|4|A|2398
6WNW|1|4|G|2399
6WNW|1|4|U|2400
6WNW|1|4|A|2401
6WNW|1|4|A|2402
6WNW|1|4|C|2403
6WNW|1|4|G|2404

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27