HL_6WNW_088

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_088 not in the Motif Atlas

Geometric match to HL_5J7L_188

Geometric discrepancy: 0.1679

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WNW|1|4|G|2431
6WNW|1|4|G|2432
6WNW|1|4|U|2433
6WNW|1|4|C|2434
6WNW|1|4|G|2435
6WNW|1|4|G|2436
6WNW|1|4|A|2437
6WNW|1|4|C|2438
6WNW|1|4|A|2439
6WNW|1|4|U|2440
6WNW|1|4|C|2441

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5