HL_6WNW_092

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6WNW|1|4|A|2534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_092 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.1173

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6WNW|1|4|U|2532
6WNW|1|4|G|2533
6WNW|1|4|A|2534
6WNW|1|4|A|2535
6WNW|1|4|U|2536
6WNW|1|4|G|2537
6WNW|1|4|G|2538
6WNW|1|4|A|2539
6WNW|1|4|A|2540
6WNW|1|4|G|2541

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15