HL_6WOO_014

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1079

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|A|519
6WOO|1|2|A|520
6WOO|1|2|U|521
6WOO|1|2|G|522
6WOO|1|2|U|523
6WOO|1|2|A|524
6WOO|1|2|A|525
6WOO|1|2|A|526
6WOO|1|2|U|527
6WOO|1|2|A|528
6WOO|1|2|C|529
6WOO|1|2|C|530
6WOO|1|2|U|531

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24