6WOO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6WOO_001 | 1/2/6:16 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6WOO_002 | 1/2/69:80 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6WOO_003 | 1/2/153:159 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6WOO_004 | 1/2/185:198 | No text annotation | ||
| HL_6WOO_005 | 1/2/229:234 | No text annotation | homologous HL_8C3A_196 NA | |
| HL_6WOO_006 | 1/2/242:249 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6WOO_007 | 1/2/275:278 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_6WOO_008 | 1/2/329:337 | GNRA related | homologous HL_4V88_193 NA | |
| HL_6WOO_009 | 1/2/367:372 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6WOO_010 | 1/2/392:403 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6WOO_011 | 1/2/413:418 | UNCG | homologous HL_4V88_196 NA | |
| HL_6WOO_012 | 1/2/449:455 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6WOO_013 | 1/2/490:495 | No text annotation | ||
| HL_6WOO_014 | 1/2/519:531 | No text annotation | geometric HL_4V88_199 NA | |
| HL_6WOO_015 | 1/2/568:573 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6WOO_017 | 1/2/714:724 | No text annotation | ||
| HL_6WOO_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6WOO_019 | 1/2/777:783 | No text annotation | ||
| HL_6WOO_020 | 1/2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_6WOO_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6WOO_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_6WOO_023 | 1/2/997:1007 | No text annotation | geometric HL_4LFB_017 HL_75293.5 | |
| HL_6WOO_024 | 1/2/1055:1064 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6WOO_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_6WOO_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_6WOO_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6WOO_117 | 1/2/1234:1251 | No text annotation | ||
| HL_6WOO_028 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6WOO_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_6WOO_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6WOO_031 | 1/2/1359:1364 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6WOO_032 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_6WOO_033 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_6WOO_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6WOO_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6WOO_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6WOO_038 | 1/3/13:22 | tRNA D-loop | homologous HL_4V90_032 HL_20811.4 | |
| HL_6WOO_039 | 1/3/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.6 | |
| HL_6WOO_040 | 1/3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.8 | |
| HL_6WOO_041 | 1/5/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6WOO_042 | 1/5/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6WOO_043 | 1/5/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6WOO_044 | 1/5/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6WOO_045 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6WOO_046 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6WOO_047 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6WOO_048 | 1/5/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6WOO_049 | 1/5/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6WOO_050 | 1/5/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6WOO_051 | 1/5/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6WOO_052 | 1/5/543:548 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6WOO_053 | 1/5/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6WOO_054 | 1/5/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6WOO_055 | 1/5/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6WOO_056 | 1/5/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6WOO_057 | 1/5/732:737 | GNRA | geometric HL_6CZR_081 NA | |
| HL_6WOO_058 | 1/5/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_6WOO_059 | 1/5/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6WOO_060 | 1/5/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6WOO_061 | 1/5/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6WOO_062 | 1/5/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6WOO_063 | 1/5/1021:1032 | No text annotation | ||
| HL_6WOO_064 | 1/5/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_6WOO_065 | 1/5/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6WOO_066 | 1/5/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6WOO_067 | 1/5/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6WOO_068 | 1/5/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6WOO_069 | 1/5/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_6WOO_070 | 1/5/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6WOO_071 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6WOO_072 | 1/5/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6WOO_073 | 1/5/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6WOO_074 | 1/5/1565:1574 | No text annotation | ||
| HL_6WOO_075 | 1/5/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6WOO_076 | 1/5/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6WOO_123 | 1/5/1680:1688 | No text annotation | homologous HL_8CRE_036 HL_77082.1 | |
| HL_6WOO_078 | 1/5/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6WOO_079 | 1/5/1760:1765 | GNRA variation | geometric HL_3AM1_002 HL_37824.7 | |
| HL_6WOO_080 | 1/5/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_6WOO_081 | 1/5/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6WOO_082 | 1/5/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6WOO_083 | 1/5/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6WOO_118 | 1/5/1977:2054 | No text annotation | ||
| HL_6WOO_084 | 1/5/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6WOO_085 | 1/5/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6WOO_086 | 1/5/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6WOO_087 | 1/5/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6WOO_088 | 1/5/2253:2263 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_6WOO_089 | 1/5/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6WOO_090 | 1/5/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6WOO_091 | 1/5/2470:2475 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6WOO_119 | 1/5/2532:2547 | No text annotation | ||
| HL_6WOO_092 | 1/5/2536:2543 | No text annotation | ||
| HL_6WOO_093 | 1/5/2567:2573 | No text annotation | ||
| HL_6WOO_094 | 1/5/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6WOO_095 | 1/5/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6WOO_096 | 1/5/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6WOO_097 | 1/5/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6WOO_098 | 1/5/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6WOO_099 | 1/5/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6WOO_100 | 1/5/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6WOO_101 | 1/5/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6WOO_102 | 1/5/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6WOO_103 | 1/5/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6WOO_104 | 1/5/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6WOO_105 | 1/5/3025:3030 | GNRA | geometric HL_1MZP_001 HL_37824.7 | |
| HL_6WOO_106 | 1/5/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6WOO_107 | 1/5/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6WOO_108 | 1/5/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_6WOO_109 | 1/5/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6WOO_110 | 1/5/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_6WOO_111 | 1/5/3350:3353 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_6WOO_121 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6WOO_112 | 1/7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6WOO_113 | 1/7/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6WOO_122 | 1/8/47:56 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_6WOO_114 | 1/8/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_6WOO_115 | 1/8/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6WOO_116 | 1/8/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6WOO_016 | No text annotation | ||
| HL_6WOO_036 | No text annotation | ||
| HL_6WOO_077 | No text annotation | ||
| HL_6WOO_120 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6WOO_001 | 1/2/23:25, 1/2/599:600 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_6WOO_002 | 1/2/34:36, 1/2/470:472 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6WOO_003 | 1/2/36:40, 1/2/465:470 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_6WOO_004 | 1/2/41:47, 1/2/430:432 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6WOO_005 | 1/2/49:51, 1/2/427:428 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6WOO_006 | 1/2/57:62, 1/2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6WOO_007 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6WOO_008 | 1/2/108:111, 1/2/301:304 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_6WOO_009 | 1/2/112:115, 1/2/299:300 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6WOO_010 | 1/2/116:121, 1/2/294:298 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6WOO_011 | 1/2/141:148, 1/2/164:171 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6WOO_012 | 1/2/149:151, 1/2/161:163 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6WOO_013 | 1/2/203:205, 1/2/258:262 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_6WOO_014 | 1/2/205:207, 1/2/256:258 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_6WOO_015 | 1/2/264:266, 1/2/287:288 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6WOO_016 | 1/2/269:272, 1/2/282:284 | No text annotation | homologous IL_4V88_400 NA | |
| IL_6WOO_017 | 1/2/273:275, 1/2/278:281 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_6WOO_018 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6WOO_019 | 1/2/317:322, 1/2/344:345 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6WOO_020 | 1/2/362:364, 1/2/375:380 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6WOO_021 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6WOO_022 | 1/2/410:412, 1/2/419:421 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6WOO_023 | 1/2/438:440, 1/2/462:463 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6WOO_024 | 1/2/442:446, 1/2/459:460 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6WOO_025 | 1/2/446:447, 1/2/457:459 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6WOO_026 | 1/2/479:481, 1/2/504:507 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_6WOO_237 | 1/2/516:517, 1/2/532:534 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_6WOO_028 | 1/2/517:519, 1/2/531:532 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6WOO_029 | 1/2/549:556, 1/2/586:587 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6WOO_030 | 1/2/556:558, 1/2/585:586 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6WOO_031 | 1/2/561:567, 1/2/574:582 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6WOO_032 | 1/2/615:621, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6WOO_033 | 1/2/623:625, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6WOO_034 | 1/2/626:630, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6WOO_035 | 1/2/645:647, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_6WOO_261 | 1/2/699:700, 1/2/738:740 | Single stack bend | geometric IL_8P9A_367 IL_90729.1 | |
| IL_6WOO_238 | 1/2/702:713, 1/2/725:736 | No text annotation | ||
| IL_6WOO_036 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6WOO_037 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6WOO_038 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6WOO_039 | 1/2/819:822, 1/2/850:852 | Isolated non-canonical cWW pair | homologous IL_4V88_426 NA | |
| IL_6WOO_240 | 1/2/868:870, 1/2/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_6WOO_041 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6WOO_042 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6WOO_043 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6WOO_044 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6WOO_045 | 1/2/984:994, 1/2/1010:1017 | No text annotation | ||
| IL_6WOO_047 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6WOO_048 | 1/2/1039:1040, 1/2/1078:1080 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_6WOO_262 | 1/2/1041:1044, 1/2/1074:1077 | No text annotation | homologous IL_8CRE_440 IL_85033.2 | |
| IL_6WOO_050 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_6WOO_051 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6WOO_052 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6WOO_053 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6WOO_054 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_6WOO_055 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6WOO_056 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6WOO_057 | 1/2/1212:1215, 1/2/1448:1451 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6WOO_058 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | geometric IL_8P9A_470 IL_28304.1 | |
| IL_6WOO_059 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6WOO_242 | 1/2/1234:1238, 1/2/1247:1251 | No text annotation | ||
| IL_6WOO_060 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6WOO_061 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6WOO_243 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6WOO_062 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6WOO_063 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6WOO_064 | 1/2/1290:1292, 1/2/1323:1325 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_6WOO_065 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_6WOO_066 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_6WOO_067 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6WOO_068 | 1/2/1352:1354, 1/2/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_6WOO_069 | 1/2/1389:1391, 1/2/1407:1412 | No text annotation | homologous IL_8C3A_465 NA | |
| IL_6WOO_070 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_6WOO_071 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_6WOO_072 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_6WOO_073 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6WOO_074 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6WOO_075 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6WOO_076 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_6WOO_077 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8C3A_473 NA | |
| IL_6WOO_078 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6WOO_079 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6WOO_080 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6WOO_081 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6WOO_082 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6WOO_083 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_6WOO_084 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_6WOO_085 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_6WOO_086 | 1/5/7:8, 1/8/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6WOO_087 | 1/5/13:15, 1/8/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6WOO_088 | 1/5/27:28, 1/5/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6WOO_089 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_6WOO_090 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6WOO_091 | 1/5/123:124, 1/5/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6WOO_092 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6WOO_263 | 1/5/163:165, 1/5/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_6WOO_247 | 1/5/169:170, 1/5/248:253 | No text annotation | ||
| IL_6WOO_095 | 1/5/177:178, 1/5/238:241 | No text annotation | ||
| IL_6WOO_096 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6WOO_097 | 1/5/337:339, 1/8/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6WOO_098 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6WOO_099 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_6WOO_100 | 1/5/429:431, 1/5/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6WOO_101 | 1/5/435:495, 1/5/618:624 | No text annotation | ||
| IL_6WOO_102 | 1/5/512:513, 1/5/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_6WOO_103 | 1/5/517:525, 1/5/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6WOO_104 | 1/5/531:538, 1/5/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6WOO_105 | 1/5/668:670, 1/5/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_6WOO_106 | 1/5/680:684, 1/5/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6WOO_107 | 1/5/725:728, 1/5/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_6WOO_108 | 1/5/752:753, 1/5/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6WOO_109 | 1/5/755:756, 1/5/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_6WOO_110 | 1/5/758:763, 1/5/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_6WOO_111 | 1/5/803:805, 1/5/938:940 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_6WOO_112 | 1/5/805:809, 1/5/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6WOO_113 | 1/5/828:829, 1/5/895:897 | Single bulged A | geometric IL_4V9F_025 IL_31462.6 | |
| IL_6WOO_114 | 1/5/833:834, 1/5/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6WOO_115 | 1/5/834:838, 1/5/855:859 | Triple sheared | geometric IL_5TBW_030 NA | |
| IL_6WOO_116 | 1/5/869:872, 1/5/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6WOO_117 | 1/5/873:875, 1/5/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6WOO_118 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_6WOO_119 | 1/5/954:956, 1/5/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6WOO_120 | 1/5/969:970, 1/5/1111:1113 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_6WOO_121 | 1/5/977:982, 1/5/1101:1104 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_6WOO_122 | 1/5/983:985, 1/5/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6WOO_123 | 1/5/991:997, 1/5/1052:1058 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_6WOO_124 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6WOO_125 | 1/5/999:1004, 1/5/1046:1049 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_6WOO_126 | 1/5/1006:1009, 1/5/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6WOO_127 | 1/5/1009:1011, 1/5/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6WOO_128 | 1/5/1013:1021, 1/5/1032:1037 | No text annotation | ||
| IL_6WOO_129 | 1/5/1069:1071, 1/5/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6WOO_130 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6WOO_131 | 1/5/1120:1122, 1/5/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6WOO_133 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6WOO_134 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6WOO_135 | 1/5/1180:1182, 1/5/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6WOO_136 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6WOO_137 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6WOO_138 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6WOO_139 | 1/5/1218:1226, 1/5/1283:1287 | No text annotation | ||
| IL_6WOO_140 | 1/5/1234:1238, 1/5/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_6WOO_141 | 1/5/1262:1266, 1/5/1275:1277 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.2 | |
| IL_6WOO_142 | 1/5/1376:1378, 1/5/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6WOO_143 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6WOO_144 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6WOO_145 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6WOO_146 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6WOO_147 | 1/5/1492:1495, 1/5/1835:1836 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_6WOO_249 | 1/5/1501:1505, 1/5/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_6WOO_149 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6WOO_150 | 1/5/1618:1621, 1/5/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6WOO_250 | 1/5/1623:1624, 1/5/1819:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_6WOO_152 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_6WOO_153 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6WOO_154 | 1/5/1661:1663, 1/5/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6WOO_155 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6WOO_156 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6WOO_157 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6WOO_158 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6WOO_159 | 1/5/1711:1717, 1/5/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6WOO_160 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6WOO_161 | 1/5/1895:1897, 1/5/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6WOO_162 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6WOO_251 | 1/5/1898:1906, 1/5/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6WOO_163 | 1/5/1901:1906, 1/5/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6WOO_164 | 1/5/1918:1923, 1/5/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6WOO_165 | 1/5/1940:1942, 1/5/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6WOO_166 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6WOO_252 | 1/5/1952:1964, 1/5/2067:2094 | No text annotation | ||
| IL_6WOO_167 | 1/5/1965:1968, 1/5/2063:2066 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6WOO_168 | 1/5/1971:1977, 1/5/2054:2060 | No text annotation | ||
| IL_6WOO_169 | 1/5/2128:2129, 1/5/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6WOO_170 | 1/5/2156:2161, 1/5/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6WOO_171 | 1/5/2196:2199, 1/5/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6WOO_172 | 1/5/2200:2201, 1/5/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6WOO_173 | 1/5/2204:2206, 1/5/2237:2238 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 | |
| IL_6WOO_174 | 1/5/2206:2210, 1/5/2235:2237 | Major groove platform with extra pair | homologous IL_5TBW_087 NA | |
| IL_6WOO_175 | 1/5/2210:2217, 1/5/2228:2235 | No text annotation | ||
| IL_6WOO_176 | 1/5/2276:2277, 1/5/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6WOO_177 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6WOO_178 | 1/5/2391:2394, 1/5/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6WOO_179 | 1/5/2396:2398, 1/5/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6WOO_180 | 1/5/2409:2411, 1/5/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6WOO_181 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6WOO_182 | 1/5/2423:2425, 1/5/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6WOO_183 | 1/5/2443:2447, 1/5/2499:2504 | No text annotation | ||
| IL_6WOO_264 | 1/5/2450:2462, 1/5/2493:2496 | No text annotation | ||
| IL_6WOO_254 | 1/5/2464:2469, 1/5/2476:2491 | No text annotation | ||
| IL_6WOO_185 | 1/5/2466:2469, 1/5/2476:2489 | No text annotation | geometric IL_1MZP_003 IL_75283.2 | |
| IL_6WOO_186 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6WOO_187 | 1/5/2563:2565, 1/5/2575:2577 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6WOO_188 | 1/5/2614:2615, 1/5/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_6WOO_189 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6WOO_190 | 1/5/2714:2716, 1/5/2740:2741 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_6WOO_191 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_6WOO_192 | 1/5/2770:2773, 1/5/2787:2788 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6WOO_193 | 1/5/2823:2824, 1/5/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6WOO_255 | 1/5/2823:2826, 1/5/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6WOO_194 | 1/5/2824:2826, 1/5/2863:2865 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_6WOO_195 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6WOO_196 | 1/5/2828:2830, 1/5/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6WOO_197 | 1/5/2835:2839, 1/5/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_6WOO_198 | 1/5/2876:2877, 1/5/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6WOO_199 | 1/5/2879:2881, 1/5/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6WOO_200 | 1/5/2881:2882, 1/5/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6WOO_201 | 1/5/2889:2891, 1/5/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6WOO_256 | 1/5/2889:2892, 1/5/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_6WOO_202 | 1/5/2891:2892, 1/5/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_6WOO_203 | 1/5/2918:2920, 1/5/2926:2928 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_6WOO_204 | 1/5/2960:2961, 1/5/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6WOO_205 | 1/5/3004:3007, 1/5/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6WOO_206 | 1/5/3012:3014, 1/5/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6WOO_207 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6WOO_208 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_6WOO_209 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6WOO_210 | 1/5/3063:3064, 1/5/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6WOO_211 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_6WOO_212 | 1/5/3158:3159, 1/5/3291:3293 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6WOO_213 | 1/5/3164:3166, 1/5/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_6WOO_214 | 1/5/3168:3170, 1/5/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6WOO_215 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6WOO_216 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6WOO_217 | 1/5/3193:3194, 1/5/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_6WOO_218 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_6WOO_219 | 1/5/3233:3238, 1/5/3249:3254 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_6WOO_220 | 1/5/3300:3303, 1/5/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_5TBW_129 NA | |
| IL_6WOO_221 | 1/5/3318:3320, 1/5/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_6WOO_222 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6WOO_223 | 1/5/3328:3330, 1/5/3373:3378 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6WOO_224 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_6WOO_259 | 1/5/3340:3342, 1/5/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6WOO_260 | 1/5/3342:3345, 1/5/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6WOO_226 | 1/5/3349:3350, 1/5/3353:3356 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_6WOO_227 | 1/7/15:16, 1/7/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6WOO_228 | 1/7/21:27, 1/7/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6WOO_229 | 1/7/28:29, 1/7/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_6WOO_230 | 1/7/29:30, 1/7/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6WOO_231 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_6WOO_232 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6WOO_233 | 1/7/84:87, 1/7/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6WOO_234 | 1/8/44:64, 1/8/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6WOO_235 | 1/8/64:66, 1/8/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_6WOO_236 | 1/8/68:69, 1/8/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6WOO_027 | Minor groove platform with extra cWW | ||
| IL_6WOO_239 | No text annotation | ||
| IL_6WOO_040 | Tandem non-canonical cWW pairs | ||
| IL_6WOO_046 | No text annotation | ||
| IL_6WOO_049 | No text annotation | ||
| IL_6WOO_241 | No text annotation | ||
| IL_6WOO_244 | No text annotation | ||
| IL_6WOO_245 | No text annotation | ||
| IL_6WOO_246 | No text annotation | ||
| IL_6WOO_093 | Other IL | ||
| IL_6WOO_094 | No text annotation | ||
| IL_6WOO_248 | Tandem non-canonical cWW pairs | ||
| IL_6WOO_132 | No text annotation | ||
| IL_6WOO_148 | No text annotation | ||
| IL_6WOO_151 | No text annotation | ||
| IL_6WOO_253 | Partly complementary | ||
| IL_6WOO_184 | No text annotation | ||
| IL_6WOO_257 | No text annotation | ||
| IL_6WOO_258 | No text annotation | ||
| IL_6WOO_225 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6WOO_001 | 1/2/40:41, 1/2/432:438, 1/2/463:465 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6WOO_030 | 1/2/40:47, 1/2/430:438, 1/2/463:465 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_6WOO_031 | 1/2/212:227, 1/2/236:242, 1/2/249:251 | No text annotation | ||
| J3_6WOO_002 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6WOO_003 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6WOO_004 | 1/2/1037:1039, 1/2/1080:1083, 1/2/1090:1094 | No text annotation | ||
| J3_6WOO_005 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6WOO_006 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6WOO_007 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6WOO_032 | 1/2/1212:1220, 1/2/1263:1267, 1/2/1442:1451 | No text annotation | ||
| J3_6WOO_008 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6WOO_009 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_6WOO_033 | 1/2/1290:1294, 1/2/1303:1306, 1/2/1318:1325 | No text annotation | ||
| J3_6WOO_010 | 1/2/1292:1294, 1/2/1303:1306, 1/2/1318:1323 | No text annotation | ||
| J3_6WOO_011 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_6WOO_034 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_6WOO_012 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6WOO_013 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6WOO_035 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_6WOO_036 | 1/5/185:189, 1/5/205:214, 1/5/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_6WOO_037 | 1/5/340:356, 1/5/363:368, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6WOO_014 | 1/5/369:376, 1/5/403:404, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6WOO_038 | 1/5/369:379, 1/5/390:404, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6WOO_015 | 1/5/502:503, 1/5/588:597, 1/5/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6WOO_016 | 1/5/814:820, 1/5/905:907, 1/5/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6WOO_017 | 1/5/829:831, 1/5/863:867, 1/5/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6WOO_018 | 1/5/986:987, 1/5/1062:1066, 1/5/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6WOO_046 | 1/5/1230:1233, 1/5/1255:1262, 1/5/1277:1279 | No text annotation | ||
| J3_6WOO_020 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6WOO_021 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6WOO_022 | 1/5/1526:1531, 1/5/1591:1595, 1/5/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6WOO_039 | 1/5/1537:1542, 1/5/1551:1560, 1/5/1579:1584 | No text annotation | ||
| J3_6WOO_023 | 1/5/1631:1632, 1/5/1641:1645, 1/5/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6WOO_040 | 1/5/1654:1658, 1/5/1791:1792, 1/5/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6WOO_024 | 1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_6WOO_025 | 1/5/2529:2532, 1/5/2547:2563, 1/5/2577:2581 | No text annotation | ||
| J3_6WOO_041 | 1/5/2529:2532, 1/5/2547:2565, 1/5/2575:2581 | No text annotation | ||
| J3_6WOO_042 | 1/5/2651:2653, 1/5/2754:2765, 1/5/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6WOO_026 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6WOO_027 | 1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6WOO_043 | 1/5/3171:3176, 1/5/3212:3220, 1/5/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6WOO_028 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6WOO_044 | 1/7/9:14, 1/7/66:67, 1/7/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_6WOO_045 | 1/8/44:45, 1/8/58:64, 1/8/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J4_6WOO_001 | 1/2/98:106, 1/2/306:308, 1/2/356:360, 1/2/382:383 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_6WOO_002 | 1/2/621:623, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6WOO_003 | 1/3/7:10, 1/3/25:27, 1/3/43:49, 1/3/65:66 | tRNA junction | homologous J4_5AXM_001 J4_70449.28 | |
| J4_6WOO_004 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_6WOO_005 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6WOO_006 | 1/5/1451:1457, 1/5/1475:1476, 1/5/1877:1880, 1/5/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_6WOO_007 | 1/5/1492:1496, 1/5/1520:1525, 1/5/1614:1615, 1/5/1829:1836 | No text annotation | ||
| J4_6WOO_008 | 1/5/1495:1496, 1/5/1520:1525, 1/5/1614:1615, 1/5/1829:1835 | No text annotation | ||
| J4_6WOO_009 | 1/5/1674:1675, 1/5/1693:1694, 1/5/1752:1753, 1/5/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_6WOO_010 | 1/5/2130:2134, 1/5/2146:2150, 1/5/2186:2190, 1/5/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6WOO_015 | 1/5/2192:2194, 1/5/2248:2250, 1/5/2266:2276, 1/5/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6WOO_012 | 1/5/2654:2658, 1/5/2712:2714, 1/5/2741:2742, 1/5/2751:2753 | No text annotation | ||
| J4_6WOO_013 | 1/5/2654:2658, 1/5/2712:2716, 1/5/2740:2742, 1/5/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6WOO_014 | 1/5/3010:3012, 1/5/3042:3043, 1/5/3098:3100, 1/5/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_6WOO_001 | 1/2/30:34, 1/2/472:478, 1/2/508:515, 1/2/535:545, 1/2/591:594 | No text annotation | ||
| J5_6WOO_002 | 1/2/53:56, 1/2/89:96, 1/2/385:387, 1/2/408:410, 1/2/421:425 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6WOO_003 | 1/2/123:140, 1/2/172:181, 1/2/202:203, 1/2/262:264, 1/2/288:292 | No text annotation | ||
| J5_6WOO_004 | 1/2/123:140, 1/2/172:181, 1/2/202:203, 1/2/262:266, 1/2/287:292 | No text annotation | ||
| J5_6WOO_005 | 1/5/20:22, 1/8/35:42, 1/8/102:107, 1/8/115:116, 1/8/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6WOO_006 | 1/5/658:663, 1/5/799:802, 1/5/941:944, 1/5/1375:1376, 1/5/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_6WOO_007 | 1/5/675:678, 1/5/702:706, 1/5/713:721, 1/5/749:751, 1/5/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6WOO_008 | 1/5/1906:1914, 1/5/1938:1939, 1/5/2109:2110, 1/5/2114:2122, 1/5/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_6WOO_009 | 1/5/2399:2406, 1/5/2815:2823, 1/5/2867:2876, 1/5/2951:2957, 1/5/2975:2980 | No text annotation | ||
| J5_6WOO_010 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2651, 1/5/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6WOO_004 | 1/2/632:644, 1/2/689:699, 1/2/740:745, 1/2/806:817, 1/2/854:866, 1/2/962:966 | No text annotation | ||
| J6_6WOO_002 | 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331, 1/8/32:35 | No text annotation | ||
| J6_6WOO_003 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2653, 1/5/2754:2765, 1/5/2793:2804 | No text annotation | ||
| J7_6WOO_001 | 1/5/949:954, 1/5/967:968, 1/5/1114:1117, 1/5/1141:1146, 1/5/1157:1161, 1/5/1338:1339, 1/5/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6WOO_019 | No text annotation | ||
| J3_6WOO_029 | No text annotation | ||
| J4_6WOO_011 | No text annotation | ||
| J6_6WOO_001 | No text annotation |
Coloring options: