HL_6WOO_032

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

6WOO|1|2|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_032 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4776

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6WOO|1|2|U|1396
6WOO|1|2|U|1397
6WOO|1|2|U|1398
6WOO|1|2|C|1399
6WOO|1|2|A|1400
6WOO|1|2|A|1401
6WOO|1|2|G|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain RR

eS17

Chain gg

RACK1