HL_6WOO_036

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAGAUCUCAGAGACUCCAUCUCAGA*G

Length

30 nucleotides

Bulged bases

6WOO|1|2|G|1692, 6WOO|1|2|U|1708, 6WOO|1|2|A|1702, 6WOO|1|2|C|1703, 6WOO|1|2|U|1704, 6WOO|1|2|C|1705, 6WOO|1|2|C|1706, 6WOO|1|2|A|1707

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|C|1686
6WOO|1|2|U|1687
6WOO|1|2|U|1688
6WOO|1|2|A|1689
6WOO|1|2|G|1690
6WOO|1|2|A|1691
6WOO|1|2|G|1692
6WOO|1|2|A|1693
6WOO|1|2|U|1708
6WOO|1|2|C|1709
6WOO|1|2|U|1710
6WOO|1|2|C|1711
6WOO|1|2|A|1712
6WOO|1|2|G|1713
6WOO|1|2|A|1714
6WOO|1|2|G|1715
6WOO|1|2|A|1702
6WOO|1|2|C|1703
6WOO|1|2|U|1704
6WOO|1|2|C|1705
6WOO|1|2|C|1706
6WOO|1|2|A|1707
6WOO|1|2|U|1708
6WOO|1|2|C|1709
6WOO|1|2|U|1710
6WOO|1|2|C|1711
6WOO|1|2|A|1712
6WOO|1|2|G|1713
6WOO|1|2|A|1714
*
6WOO|1|2|G|1715

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain GG

eS6