HL_6WOO_042

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

6WOO|1|5|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_042 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.0749

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6WOO|1|5|C|69
6WOO|1|5|A|70
6WOO|1|5|A|71
6WOO|1|5|C|72
6WOO|1|5|C|73
6WOO|1|5|G|74

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

eL13

Chain N

eL15

Chain a

uL15

Chain i

eL36