HL_6WOO_045

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6WOO|1|5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_045 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1385

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6WOO|1|5|U|194
6WOO|1|5|U|195
6WOO|1|5|G|196
6WOO|1|5|G|197
6WOO|1|5|A|198
6WOO|1|5|A|199
6WOO|1|5|C|200
6WOO|1|5|A|201

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Y

uL24

Chain e

eL32