HL_6WOO_049
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 6WOO|1|5|G|304, 6WOO|1|5|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_049 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0989
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6WOO|1|5|G|303
6WOO|1|5|G|304
6WOO|1|5|U|305
6WOO|1|5|A|306
6WOO|1|5|A|307
6WOO|1|5|A|308
6WOO|1|5|U|309
6WOO|1|5|U|310
6WOO|1|5|C|311
6WOO|1|5|C|312
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain i
- eL36
- Chain o
- eL42
Coloring options: