HL_6WOO_069
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6WOO|1|5|U|1348, 6WOO|1|5|G|1349, 6WOO|1|5|A|1350, 6WOO|1|5|U|1351, 6WOO|1|5|A|1352, 6WOO|1|5|U|1353, 6WOO|1|5|G|1354, 6WOO|1|5|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_069 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.1678
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
6WOO|1|5|U|1347
6WOO|1|5|U|1348
6WOO|1|5|G|1349
6WOO|1|5|A|1350
6WOO|1|5|U|1351
6WOO|1|5|A|1352
6WOO|1|5|U|1353
6WOO|1|5|G|1354
6WOO|1|5|A|1355
6WOO|1|5|U|1356
6WOO|1|5|G|1357
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain E
- eL6
- Chain Q
- eL18
- Chain e
- eL32
Coloring options: