HL_6WOO_071

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_071 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0716

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6WOO|1|5|A|1462
6WOO|1|5|U|1463
6WOO|1|5|G|1464
6WOO|1|5|A|1465
6WOO|1|5|G|1466
6WOO|1|5|A|1467
6WOO|1|5|A|1468
6WOO|1|5|C|1469
6WOO|1|5|U|1470

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31