HL_6WOO_072

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6WOO|1|5|G|1507, 6WOO|1|5|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_072 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1014

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6WOO|1|5|A|1506
6WOO|1|5|G|1507
6WOO|1|5|C|1508
6WOO|1|5|A|1509
6WOO|1|5|G|1510
6WOO|1|5|U|1511
6WOO|1|5|U|1512

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39