HL_6WOO_075

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6WOO|1|5|U|1606, 6WOO|1|5|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_075 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0796

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WOO|1|5|G|1599
6WOO|1|5|U|1600
6WOO|1|5|U|1601
6WOO|1|5|A|1602
6WOO|1|5|A|1603
6WOO|1|5|G|1604
6WOO|1|5|A|1605
6WOO|1|5|U|1606
6WOO|1|5|U|1607
6WOO|1|5|C|1608

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34